Resource

Id DNase-seq/ENCSR133QZBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR133QZB [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR133QZB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:51.740828+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR133QZB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR133QZB float

DNase-seq_ENCSR133QZB
DNase-seq ENCSR133QZB [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR133QZB [0.0519, 28.3]
n
20,696,955
mean
1.69
sd
2.75

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 206969550.64% 95975
chr1 2043994 0.82% 9345
chr2 1913717 0.79% 8805
chr3 1032745 0.52% 4799
chr4 519576 0.27% 2396
chr5 989619 0.55% 4602
chr6 1095006 0.64% 5005
chr7 967658 0.61% 4478
chr8 792544 0.55% 3738
chr9 853781 0.62% 4021
chr10 1294228 0.97% 6131
chr11 1019547 0.75% 4780
chr12 821896 0.62% 3750
chr13 421729 0.37% 1969
chr14 769026 0.72% 3547
chr15 780976 0.77% 3726
chr16 717943 0.79% 3355
chr17 1111823 1.34% 5053
chr18 436238 0.54% 2006
chr19 955399 1.63% 4402
chr20 596112 0.93% 2809
chr21 310423 0.66% 1412
chr22 621448 1.22% 2936
chrX 630855 0.40% 2905
chrY 672 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 95975 1 1200 215.65 200
global segment-length histogram

Files

Filename Size md5
ENCFF326MXR.bed.gz 993.3 KB ec044cf547984dcbcd287be35e25b158
ENCFF326MXR.tabix.bed.gz 926.59 KB 8a3259ca69993689fc29ab45dc65192f
ENCFF326MXR.tabix.bed.gz.tbi 247.35 KB 76554c39413dfbaf31e7e923c6086686
genomic_resource.yaml 1.27 KB 0c00faf9611d847e2b51782b77601fdf
statistics/