Resource
| Id | DNase-seq/ENCSR133KBX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR133KBX [biosample_summary="Homo sapiens small intestine tissue female embryo (107 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (107 days) output_type: peaks audit_warning: Alignment file {ENCFF753AOO|/files/ENCFF753AOO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 23001916 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR133KBX | float |
DNase-seq_ENCSR133KBX |
DNase-seq ENCSR133KBX [biosample_summary="Homo sapiens small intestine tissue female embryo (107 days)"]
|
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[0.349, 16.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7048387 | 0.22% | 38763 |
| chr1 | 669142 | 0.27% | 3670 |
| chr2 | 542927 | 0.22% | 3041 |
| chr3 | 454499 | 0.23% | 2492 |
| chr4 | 349509 | 0.18% | 1935 |
| chr5 | 365800 | 0.20% | 2014 |
| chr6 | 403096 | 0.24% | 2260 |
| chr7 | 364911 | 0.23% | 2025 |
| chr8 | 294301 | 0.20% | 1631 |
| chr9 | 292755 | 0.21% | 1616 |
| chr10 | 331234 | 0.25% | 1850 |
| chr11 | 362087 | 0.27% | 1992 |
| chr12 | 353985 | 0.27% | 1942 |
| chr13 | 180264 | 0.16% | 1000 |
| chr14 | 230386 | 0.22% | 1217 |
| chr15 | 224710 | 0.22% | 1255 |
| chr16 | 245071 | 0.27% | 1334 |
| chr17 | 316613 | 0.38% | 1719 |
| chr18 | 147227 | 0.18% | 818 |
| chr19 | 353248 | 0.60% | 1803 |
| chr20 | 179445 | 0.28% | 1003 |
| chr21 | 74821 | 0.16% | 412 |
| chr22 | 128369 | 0.25% | 710 |
| chrX | 183585 | 0.12% | 1021 |
| chrY | 402 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 38763 | 4 | 820 | 181.83 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF540NZQ.bed.gz | 408.15 KB | 171cb3cef36413b722a2e953facc030f |
| ENCFF540NZQ.tabix.bed.gz | 361.7 KB | 9bb47f6317a626a82fa44148506d87c8 |
| ENCFF540NZQ.tabix.bed.gz.tbi | 230.51 KB | 582fd72985b9e4a431a0d55019f235fc |
| genomic_resource.yaml | 1.85 KB | aca1bac3a7551d4b7e9836d3dab312f2 |
| statistics/ |
