| Id: | DNase-seq/ENCSR130HIE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR130HIE [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF799KWA|/files/ENCFF799KWA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 23212542 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR130HIE | float |
DNase-seq_ENCSR130HIE |
DNase-seq ENCSR130HIE [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours"]
|
 |
[0.432, 38.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF176VRX.bed.gz | 353.69 KB | 18bbe14b0d9ddd5ab65cca3d2496d762 |
| ENCFF176VRX.bed.gz.dvc | 100.0 B | 4059c18fb43bd4865c8cbc2bffb16081 |
| ENCFF176VRX.tabix.bed.gz | 318.98 KB | b017398f1d0d11f7d6e782f0b6395aa2 |
| ENCFF176VRX.tabix.bed.gz.dvc | 106.0 B | efe610b1268877015886d0339f8b6117 |
| ENCFF176VRX.tabix.bed.gz.tbi | 184.32 KB | 6d00fa0147ab6324d1937cec25e9b900 |
| ENCFF176VRX.tabix.bed.gz.tbi.dvc | 110.0 B | e5ffa6795f226545fa41762ef009ac39 |
| genomic_resource.yaml | 2.46 KB | 82b0c086e1ff637eb566b77ba0f4f367 |
| genomic_resource_original.yaml | 2.23 KB | da99999635110aa553bdbee66af08d5f |
| statistics/ |