DNase-seq_ENCSR129KIV
DNase-seq ENCSR129KIV [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (108 days)"]
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| Id: | DNase-seq/ENCSR129KIV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR129KIV [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (108 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (108 days) output_type: peaks audit_warning: Alignment file {ENCFF743BAI|/files/ENCFF743BAI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24787099 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR129KIV | float |
DNase-seq_ENCSR129KIV |
DNase-seq ENCSR129KIV [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (108 days)"]
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[0.243, 25.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF813EFK.bed.gz | 600.89 KB | e22ab178bcfd8e75b650b8c8f3c2a23e |
| ENCFF813EFK.bed.gz.dvc | 100.0 B | b92125e47c8c5d90594d4b25ff278878 |
| ENCFF813EFK.tabix.bed.gz | 533.86 KB | 5d11327968f7e515d3c24e4a3b276a85 |
| ENCFF813EFK.tabix.bed.gz.dvc | 106.0 B | f3e0458b1e28ce3bc7138db6982b8de0 |
| ENCFF813EFK.tabix.bed.gz.tbi | 313.72 KB | d189837c5476ac10ba6c4d303c94f57c |
| ENCFF813EFK.tabix.bed.gz.tbi.dvc | 110.0 B | 16729dde09c089a89f59f80a2b49ee4d |
| genomic_resource.yaml | 1.88 KB | e675e9bd9a121b991fa4f23a57f79682 |
| genomic_resource_original.yaml | 1.77 KB | 7d6d9858b2d5545025b4df573cd0cc28 |
| statistics/ |