Resource

Id DNase-seq/ENCSR129HDKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR129HDK [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (42 years)"]
Description
Labels
  • accession: ENCSR129HDK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell male adult (42 years)
  • date_created: 2020-04-24T17:45:35.691925+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR129HDK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR129HDK float

DNase-seq_ENCSR129HDK
DNase-seq ENCSR129HDK [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (42 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR129HDK [0.233, 37.6]
n
6,312,363
mean
5.18
sd
4.94

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 63123630.20% 32322
chr1 652486 0.26% 3323
chr2 434585 0.18% 2211
chr3 337567 0.17% 1717
chr4 215725 0.11% 1091
chr5 270588 0.15% 1382
chr6 363796 0.21% 1847
chr7 287770 0.18% 1496
chr8 217212 0.15% 1127
chr9 251336 0.18% 1311
chr10 267784 0.20% 1384
chr11 324603 0.24% 1671
chr12 320676 0.24% 1641
chr13 122523 0.11% 614
chr14 228005 0.21% 1166
chr15 206079 0.20% 1078
chr16 265109 0.29% 1359
chr17 395258 0.47% 2035
chr18 93514 0.12% 488
chr19 466863 0.80% 2322
chr20 176804 0.27% 936
chr21 68296 0.15% 354
chr22 157571 0.31% 819
chrX 180857 0.12% 914
chrY 7356 0.01% 36
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32322 5 780 195.3 200
global segment-length histogram

Files

Filename Size md5
ENCFF956LXQ.bed.gz 359.71 KB e9f4ab813ce99b3a1d54043d081cc4a8
ENCFF956LXQ.tabix.bed.gz 327.16 KB ff2c5118ac4f55dad6dd18f2a481f9df
ENCFF956LXQ.tabix.bed.gz.tbi 179.62 KB 884fffda0a645d935db110e7887412ac
genomic_resource.yaml 1.26 KB 5aabb81b84ac7aeab682bc8968882d51
statistics/