DNase-seq_ENCSR128GBN
DNase-seq ENCSR128GBN [biosample_summary="Homo sapiens spleen tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR128GBN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR128GBN [biosample_summary="Homo sapiens spleen tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF518TQH|/files/ENCFF518TQH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR128GBN | float |
DNase-seq_ENCSR128GBN |
DNase-seq ENCSR128GBN [biosample_summary="Homo sapiens spleen tissue female adult (53 years)"]
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[0.0271, 11.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF052RRA.bed.gz | 2.58 MB | 314113fb55c43dfc841b0adfcc59739e |
| ENCFF052RRA.bed.gz.dvc | 101.0 B | ee4ddb93f710850872ddc83295345fc3 |
| ENCFF052RRA.tabix.bed.gz | 2.46 MB | e31a5410e9a235a408329681b55771f8 |
| ENCFF052RRA.tabix.bed.gz.dvc | 107.0 B | d924b8ba6cf83d95bd29d06bb310d34e |
| ENCFF052RRA.tabix.bed.gz.tbi | 315.29 KB | 04feb5ffc2beb7e9f2b4e0f7f092f03a |
| ENCFF052RRA.tabix.bed.gz.tbi.dvc | 110.0 B | 8784fd11428558efa77e0c7474456130 |
| genomic_resource.yaml | 2.03 KB | 5dcb58c9776d72f06adf8040d150acb5 |
| genomic_resource_original.yaml | 1.93 KB | 32434878c708e0e1cf3d9c308dc5f017 |
| statistics/ |