DNase-seq_ENCSR127PWK
DNase-seq ENCSR127PWK [biosample_summary="Homo sapiens eye tissue female embryo (76 days)"]
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| Id: | DNase-seq/ENCSR127PWK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR127PWK [biosample_summary="Homo sapiens eye tissue female embryo (76 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (76 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF276XKV|/files/ENCFF276XKV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR127PWK | float |
DNase-seq_ENCSR127PWK |
DNase-seq ENCSR127PWK [biosample_summary="Homo sapiens eye tissue female embryo (76 days)"]
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[0.019, 15.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF292OZN.bed.gz | 2.14 MB | 56c27852fdf74976da08bbd7a9adf366 |
| ENCFF292OZN.bed.gz.dvc | 101.0 B | bdd8342a5eb42824ed264a93b7ea368b |
| ENCFF292OZN.tabix.bed.gz | 1.99 MB | f0246e68eda3eae4a86254364543c6ee |
| ENCFF292OZN.tabix.bed.gz.dvc | 107.0 B | f899fee154a71fd629863e4530395600 |
| ENCFF292OZN.tabix.bed.gz.tbi | 633.97 KB | 4413037efa59b8c9bd4ac2761feb97db |
| ENCFF292OZN.tabix.bed.gz.tbi.dvc | 110.0 B | 1057d58430b503ea1dfb6b9af92bb83f |
| genomic_resource.yaml | 2.02 KB | 6a2ac5c4bddc9b15b72ab38a16268168 |
| genomic_resource_original.yaml | 1.92 KB | e4810e7032537575c3f3627a921a52df |
| statistics/ |