Resource

Id DNase-seq/ENCSR126EVXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR126EVX [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR126EVX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:49.528690+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR126EVX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR126EVX float

DNase-seq_ENCSR126EVX
DNase-seq ENCSR126EVX [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR126EVX [0.104, 122]
n
10,304,483
mean
9.8
sd
15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 103044830.32% 54657
chr1 1032427 0.41% 5466
chr2 711684 0.29% 3780
chr3 539321 0.27% 2847
chr4 334942 0.18% 1767
chr5 452372 0.25% 2406
chr6 577830 0.34% 3078
chr7 474536 0.30% 2511
chr8 369461 0.25% 1979
chr9 410401 0.30% 2187
chr10 456841 0.34% 2431
chr11 532570 0.39% 2843
chr12 524373 0.39% 2777
chr13 208162 0.18% 1090
chr14 360065 0.34% 1914
chr15 338123 0.33% 1818
chr16 444438 0.49% 2357
chr17 655794 0.79% 3461
chr18 164016 0.20% 885
chr19 704936 1.20% 3654
chr20 298864 0.46% 1614
chr21 129177 0.28% 685
chr22 268962 0.53% 1438
chrX 315188 0.20% 1669
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54657 2 720 188.53 180
global segment-length histogram

Files

Filename Size md5
ENCFF360ZMS.bed.gz 624.5 KB a8f41d157e32398311121b0778c9f698
ENCFF360ZMS.tabix.bed.gz 568.05 KB 2127c1ebd91bfac9db6492cd46cab8da
ENCFF360ZMS.tabix.bed.gz.tbi 237.24 KB 8589d8420fbbb808d082adf040311d68
genomic_resource.yaml 1.27 KB 915bf609be9a9d9092a438a6b4be9a36
statistics/