| Id: | DNase-seq/ENCSR124PXN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR124PXN [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF457USJ|/files/ENCFF457USJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31654066 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR124PXN | float |
DNase-seq_ENCSR124PXN |
DNase-seq ENCSR124PXN [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
|
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[0.285, 49.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF055AZI.bed.gz | 474.97 KB | 0be3b289ddab265612d2c909fdcb02f1 |
| ENCFF055AZI.bed.gz.dvc | 100.0 B | 4d443253deba2595011e202872826fc9 |
| ENCFF055AZI.tabix.bed.gz | 429.11 KB | 794381e921ff20f46074ee9e69345545 |
| ENCFF055AZI.tabix.bed.gz.dvc | 106.0 B | b18024d2aba462eb7c1f83526bdcd381 |
| ENCFF055AZI.tabix.bed.gz.tbi | 226.67 KB | 3115825b30b8def790bbbfa850b53a4c |
| ENCFF055AZI.tabix.bed.gz.tbi.dvc | 110.0 B | 7c5c3e9fd0e7fc24287943802987eef5 |
| genomic_resource.yaml | 2.22 KB | 5fa3fc4fc27f16e09db72e10c9b5fe01 |
| genomic_resource_original.yaml | 2.04 KB | 72139d962f9f11cd97f49f9d08a0a25d |
| statistics/ |