DNase-seq_ENCSR124IMM
DNase-seq ENCSR124IMM [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR124IMM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR124IMM [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF063HKZ|/files/ENCFF063HKZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR124IMM | float |
DNase-seq_ENCSR124IMM |
DNase-seq ENCSR124IMM [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0733, 13.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF735SHW.bed.gz | 678.42 KB | 8dfb2754376e47335fe52eea150c16cc |
| ENCFF735SHW.bed.gz.dvc | 100.0 B | 5d72755d29f2a10d0627b37663cd23d5 |
| ENCFF735SHW.tabix.bed.gz | 615.27 KB | 5bbf9e6f1dcaa4ecbf56a383aca15706 |
| ENCFF735SHW.tabix.bed.gz.dvc | 106.0 B | 0ac8bf1173794f922a99d6f4d375f8b4 |
| ENCFF735SHW.tabix.bed.gz.tbi | 281.49 KB | 56bb39cef8e74a83220f4c45b21c7a79 |
| ENCFF735SHW.tabix.bed.gz.tbi.dvc | 110.0 B | 353508b0add1eef184af8ca993875d49 |
| genomic_resource.yaml | 2.28 KB | 6d47ee779ac45878c1d2a3e58954ef21 |
| genomic_resource_original.yaml | 2.12 KB | ad2bf696fdad34d33782a1ade829d23b |
| statistics/ |