DNase-seq_ENCSR122NRV
DNase-seq ENCSR122NRV [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (78 years)"]
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| Id: | DNase-seq/ENCSR122NRV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR122NRV [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (78 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF593VRV|/files/ENCFF593VRV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR122NRV | float |
DNase-seq_ENCSR122NRV |
DNase-seq ENCSR122NRV [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (78 years)"]
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[0.0449, 15.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF825JOD.bed.gz | 916.24 KB | 90d051634dd63016e9ae88def878b861 |
| ENCFF825JOD.bed.gz.dvc | 100.0 B | ba2881b9fe05e419c549bf73b07ee370 |
| ENCFF825JOD.tabix.bed.gz | 834.47 KB | 1c3229ef6f155227f7d45670f66c357d |
| ENCFF825JOD.tabix.bed.gz.dvc | 106.0 B | 5a1bf88b3fdad75823f7bfaa7ed1d499 |
| ENCFF825JOD.tabix.bed.gz.tbi | 325.35 KB | 08b971b2368a22dbaaed885584736592 |
| ENCFF825JOD.tabix.bed.gz.tbi.dvc | 110.0 B | fe0ed6745ac465544776a7a46957f14d |
| genomic_resource.yaml | 2.08 KB | 2d7f32279c8c529ed99b8c2054551ebc |
| genomic_resource_original.yaml | 1.97 KB | 03a4982ed242d1f70f0c48c419756ebf |
| statistics/ |