Resource

Id DNase-seq/ENCSR121BSWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR121BSW [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
Description
Labels
  • accession: ENCSR121BSW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours
  • date_created: 2020-04-18T22:21:49.973749+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR121BSW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR121BSW float

DNase-seq_ENCSR121BSW
DNase-seq ENCSR121BSW [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR121BSW [0.0904, 47.4]
n
11,623,390
mean
4.21
sd
5.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 116233900.36% 61784
chr1 1185045 0.48% 6259
chr2 836555 0.35% 4435
chr3 652109 0.33% 3461
chr4 416001 0.22% 2224
chr5 523002 0.29% 2828
chr6 701846 0.41% 3713
chr7 522794 0.33% 2813
chr8 437574 0.30% 2358
chr9 458382 0.33% 2458
chr10 542656 0.41% 2869
chr11 579483 0.43% 3079
chr12 614545 0.46% 3237
chr13 242268 0.21% 1311
chr14 406966 0.38% 2160
chr15 382044 0.37% 2071
chr16 452561 0.50% 2403
chr17 679027 0.82% 3557
chr18 186363 0.23% 1010
chr19 702433 1.20% 3653
chr20 318748 0.49% 1717
chr21 143277 0.31% 765
chr22 272234 0.54% 1446
chrX 367384 0.24% 1956
chrY 93 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 61784 2 780 188.13 180
global segment-length histogram

Files

Filename Size md5
ENCFF250RFR.bed.gz 692.1 KB 83aeb5ede552bf9c5e271ffa9e3a85b6
ENCFF250RFR.tabix.bed.gz 632.29 KB 6f13033c6e2705ef4d31102d7de3d552
ENCFF250RFR.tabix.bed.gz.tbi 262.98 KB 845f2e1ae3e8214abd0cac55f6cc61ad
genomic_resource.yaml 1.61 KB 8459c6ce9739ea1c22def4d59ad45471
statistics/