DNase-seq_ENCSR119HXE
DNase-seq ENCSR119HXE [biosample_summary="Homo sapiens stomach tissue female embryo (105 days)"]
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| Id: | DNase-seq/ENCSR119HXE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR119HXE [biosample_summary="Homo sapiens stomach tissue female embryo (105 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (105 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN118IMJ|/analyses/ENCAN118IMJ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF598SUR|/files/ENCFF598SUR/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28358550 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF944ZDV|/files/ENCFF944ZDV/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28156043 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR119HXE | float |
DNase-seq_ENCSR119HXE |
DNase-seq ENCSR119HXE [biosample_summary="Homo sapiens stomach tissue female embryo (105 days)"]
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[3, 665] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF694LGV.bed.gz | 604.77 KB | 7fa3117de1f6fdaed7f682c244aaa9b9 |
| ENCFF694LGV.bed.gz.dvc | 100.0 B | a02ed44fb97021c4d10a6d28240f2504 |
| ENCFF694LGV.tabix.bed.gz | 518.36 KB | 20286aa31dce03e50fb36da15b0b8bf9 |
| ENCFF694LGV.tabix.bed.gz.dvc | 106.0 B | 80c13bc5029881ad60c049f766e5a718 |
| ENCFF694LGV.tabix.bed.gz.tbi | 305.22 KB | b2550a694935840292ae382f96fc152c |
| ENCFF694LGV.tabix.bed.gz.tbi.dvc | 110.0 B | a34431bc6fbe7e92e1514df0e9f74e51 |
| genomic_resource.yaml | 2.59 KB | 72c88a207e539fe48ea836a09bf1bcc9 |
| genomic_resource_original.yaml | 2.49 KB | ed6415346feaf762e417bca3abcc229c |
| statistics/ |