Resource

Id DNase-seq/ENCSR116WWWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR116WWW [biosample_summary="Homo sapiens small intestine tissue female embryo (120 days)"]
Description
Labels
  • accession: ENCSR116WWW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue female embryo (120 days)
  • date_created: 2015-09-16T21:42:48.006937+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR116WWW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR116WWW float

DNase-seq_ENCSR116WWW
DNase-seq ENCSR116WWW [biosample_summary="Homo sapiens small intestine tissue female embryo (120 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR116WWW [0.145, 18.5]
n
16,109,321
mean
2.07
sd
2.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 161093210.50% 86007
chr1 1557989 0.63% 8304
chr2 1255204 0.52% 6751
chr3 1029754 0.52% 5503
chr4 800593 0.42% 4368
chr5 827433 0.46% 4486
chr6 1000722 0.59% 5343
chr7 813309 0.51% 4375
chr8 700268 0.48% 3732
chr9 685943 0.50% 3643
chr10 745710 0.56% 4017
chr11 867863 0.64% 4620
chr12 812685 0.61% 4321
chr13 384058 0.34% 2063
chr14 519855 0.49% 2758
chr15 509344 0.50% 2744
chr16 545773 0.60% 2896
chr17 729583 0.88% 3830
chr18 351717 0.44% 1903
chr19 648730 1.11% 3233
chr20 409284 0.64% 2198
chr21 176191 0.38% 947
chr22 305545 0.60% 1632
chrX 431114 0.28% 2335
chrY 654 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86007 3 800 187.3 180
global segment-length histogram

Files

Filename Size md5
ENCFF171RGZ.bed.gz 916.54 KB 4e600ca89657374fee3bd0e4e0046f1e
ENCFF171RGZ.tabix.bed.gz 828.48 KB a1ca475e98982f40a9e0c685435febdd
ENCFF171RGZ.tabix.bed.gz.tbi 393.18 KB a0c8cea6cfd01e125f780906f4791e47
genomic_resource.yaml 2.06 KB cfede34a57ecdd02b65a5866f1c37c8a
statistics/