DNase-seq_ENCSR116WWW
DNase-seq ENCSR116WWW [biosample_summary="Homo sapiens small intestine tissue female embryo (120 days)"]
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| Id: | DNase-seq/ENCSR116WWW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR116WWW [biosample_summary="Homo sapiens small intestine tissue female embryo (120 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (120 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF717HEA|/files/ENCFF717HEA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR116WWW | float |
DNase-seq_ENCSR116WWW |
DNase-seq ENCSR116WWW [biosample_summary="Homo sapiens small intestine tissue female embryo (120 days)"]
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[0.145, 18.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF171RGZ.bed.gz | 916.54 KB | 4e600ca89657374fee3bd0e4e0046f1e |
| ENCFF171RGZ.bed.gz.dvc | 100.0 B | ae911f1394c3def1a4ba2ef0bad83ea7 |
| ENCFF171RGZ.tabix.bed.gz | 828.48 KB | a1ca475e98982f40a9e0c685435febdd |
| ENCFF171RGZ.tabix.bed.gz.dvc | 106.0 B | ae9b53c8c38a82799ba2ca69eefbc352 |
| ENCFF171RGZ.tabix.bed.gz.tbi | 393.18 KB | a0c8cea6cfd01e125f780906f4791e47 |
| ENCFF171RGZ.tabix.bed.gz.tbi.dvc | 110.0 B | fc2d4c43fa8d943034e71f8f38403f05 |
| genomic_resource.yaml | 2.06 KB | cfede34a57ecdd02b65a5866f1c37c8a |
| genomic_resource_original.yaml | 1.95 KB | 91bac8474ea247a12b3840b59a292e49 |
| statistics/ |