DNase-seq_ENCSR114QAK
DNase-seq ENCSR114QAK [biosample_summary="Homo sapiens A673"]
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| Id: | DNase-seq/ENCSR114QAK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR114QAK [biosample_summary="Homo sapiens A673"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF037RUL|/files/ENCFF037RUL/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR114QAK | float |
DNase-seq_ENCSR114QAK |
DNase-seq ENCSR114QAK [biosample_summary="Homo sapiens A673"]
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[0.112, 22] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF629STI.bed.gz | 453.24 KB | a3607bc795dd7b439d84c11120231428 |
| ENCFF629STI.bed.gz.dvc | 100.0 B | f2b1dd1b757bf256c6d2bc222919f164 |
| ENCFF629STI.tabix.bed.gz | 432.64 KB | 915a38c619fddaab13f2ee955f463675 |
| ENCFF629STI.tabix.bed.gz.dvc | 106.0 B | 0ddfc3abb3cb11f55364109040ece61c |
| ENCFF629STI.tabix.bed.gz.tbi | 190.19 KB | 6dc1f9b68cc93510fee4b85876ed2e96 |
| ENCFF629STI.tabix.bed.gz.tbi.dvc | 110.0 B | 6d2a2be026aaa1cb1ea6397451fa31d3 |
| genomic_resource.yaml | 1.9 KB | 3dd9e0f6e14ddd76405c54a439be2953 |
| genomic_resource_original.yaml | 1.83 KB | afc130d04a19a9a8d112d744a3db4f27 |
| statistics/ |