Resource

Id DNase-seq/ENCSR114QAKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR114QAK [biosample_summary="Homo sapiens A673"]
Description
Labels
  • accession: ENCSR114QAK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002106/
  • biosample_summary: Homo sapiens A673
  • date_created: 2022-07-28T17:47:19.231553+00:00
  • date_released: 2022-08-09
  • doi: 10.17989/ENCSR114QAK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR114QAK float

DNase-seq_ENCSR114QAK

DNase-seq ENCSR114QAK [biosample_summary="Homo sapiens A673"]
HISTOGRAM FOR DNase-seq_ENCSR114QAK [0.112, 22]
n
10,818,924
mean
1.87
sd
1.18

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 108189240.34% 44259
chr1 998340 0.40% 3956
chr2 789108 0.33% 3191
chr3 539074 0.27% 2171
chr4 426303 0.22% 1673
chr5 515359 0.28% 2070
chr6 578087 0.34% 2279
chr7 494238 0.31% 2022
chr8 480467 0.33% 2007
chr9 437456 0.32% 1820
chr10 487457 0.36% 2020
chr11 779652 0.58% 3246
chr12 524461 0.39% 2079
chr13 234325 0.20% 912
chr14 370802 0.35% 1552
chr15 338557 0.33% 1408
chr16 389664 0.43% 1624
chr17 616170 0.74% 2546
chr18 188517 0.23% 762
chr19 652207 1.11% 2671
chr20 303274 0.47% 1303
chr21 133740 0.29% 593
chr22 260318 0.51% 1154
chrX 281045 0.18% 1198
chrY 303 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44259 1 1320 244.45 201
global segment-length histogram

Files

Filename Size md5
ENCFF629STI.bed.gz 453.24 KB a3607bc795dd7b439d84c11120231428
ENCFF629STI.tabix.bed.gz 432.64 KB 915a38c619fddaab13f2ee955f463675
ENCFF629STI.tabix.bed.gz.tbi 190.19 KB 6dc1f9b68cc93510fee4b85876ed2e96
genomic_resource.yaml 1.9 KB 3dd9e0f6e14ddd76405c54a439be2953
statistics/