Resource

Id DNase-seq/ENCSR112AKEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR112AKE [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR112AKE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002740/
  • biosample_summary: Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)
  • date_created: 2020-11-04T06:14:32.506423+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR112AKE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR112AKE float

DNase-seq_ENCSR112AKE

DNase-seq ENCSR112AKE [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
HISTOGRAM FOR DNase-seq_ENCSR112AKE [0.118, 23.9]
n
8,926,144
mean
3.07
sd
2.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89261440.28% 47316
chr1 871979 0.35% 4608
chr2 643606 0.27% 3441
chr3 517446 0.26% 2723
chr4 350660 0.18% 1860
chr5 425175 0.23% 2273
chr6 438692 0.26% 2298
chr7 431390 0.27% 2328
chr8 412445 0.28% 2250
chr9 375114 0.27% 1987
chr10 427288 0.32% 2301
chr11 516908 0.38% 2759
chr12 436286 0.33% 2297
chr13 162278 0.14% 848
chr14 298519 0.28% 1579
chr15 278427 0.27% 1480
chr16 355487 0.39% 1849
chr17 473370 0.57% 2503
chr18 150610 0.19% 832
chr19 514110 0.88% 2564
chr20 270596 0.42% 1475
chr21 112067 0.24% 598
chr22 259277 0.51% 1407
chrX 204069 0.13% 1053
chrY 345 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47316 2 820 188.65 180
global segment-length histogram

Files

Filename Size md5
ENCFF093JBS.bed.gz 520.66 KB d0631e22cf505903439ba8c65e73d040
ENCFF093JBS.tabix.bed.gz 472.07 KB acdb27ad05d71c06a134ad88d707752f
ENCFF093JBS.tabix.bed.gz.tbi 231.03 KB 5883ae4d1b63713c1e95445a7235a917
genomic_resource.yaml 1.47 KB f46f96ee8932a6d92f117fcdd3c88cea
statistics/