Resource

Id DNase-seq/ENCSR111LTTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR111LTT [biosample_summary="Homo sapiens T-cell male adult (55 years)"]
Description
Labels
  • accession: ENCSR111LTT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (55 years)
  • date_created: 2020-03-30T19:01:15.073144+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR111LTT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (55 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR111LTT float

DNase-seq_ENCSR111LTT
DNase-seq ENCSR111LTT [biosample_summary="Homo sapiens T-cell male adult (55 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR111LTT [0.153, 85.1]
n
10,309,072
mean
6.3
sd
8.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 103090720.32% 55900
chr1 1039889 0.42% 5612
chr2 722642 0.30% 3932
chr3 554780 0.28% 3030
chr4 353101 0.19% 1900
chr5 471874 0.26% 2562
chr6 603605 0.35% 3247
chr7 471499 0.30% 2591
chr8 378883 0.26% 2086
chr9 413950 0.30% 2255
chr10 467643 0.35% 2548
chr11 530062 0.39% 2902
chr12 528214 0.40% 2860
chr13 212535 0.19% 1152
chr14 359379 0.34% 1948
chr15 338465 0.33% 1836
chr16 419683 0.46% 2261
chr17 621073 0.75% 3326
chr18 171503 0.21% 950
chr19 651007 1.11% 3439
chr20 289239 0.45% 1593
chr21 129398 0.28% 696
chr22 250609 0.49% 1369
chrX 317672 0.20% 1737
chrY 12367 0.02% 68
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55900 3 880 184.42 180
global segment-length histogram

Files

Filename Size md5
ENCFF839QLN.bed.gz 629.91 KB ae6f3a79bd070d15f7bb4eb1006b7002
ENCFF839QLN.tabix.bed.gz 573.75 KB 15efdbc3324ccdd361387a7570698eaf
ENCFF839QLN.tabix.bed.gz.tbi 251.69 KB a61b311dd3e9d7cf269715544e00bf31
genomic_resource.yaml 1.18 KB 1dd7f1a8d2d56db08b031115d66b3e65
statistics/