Resource

Id DNase-seq/ENCSR109DTUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR109DTU [biosample_summary="Homo sapiens activated B cell male adult\ \ (22 years) treated with 0.5 \u03BCM CpG ODN for 24 hours"]
Description
Labels
  • accession: ENCSR109DTU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000506/
  • biosample_summary: Homo sapiens activated B cell male adult (22 years) treated with 0.5 μM CpG ODN for 24 hours
  • date_created: 2021-11-02T18:43:26.245165+00:00
  • date_released: 2022-01-26
  • doi: 10.17989/ENCSR109DTU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (22 years) treated with 0.5 μM CpG ODN for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR109DTU float

DNase-seq_ENCSR109DTU

DNase-seq ENCSR109DTU [biosample_summary="Homo sapiens activated B cell male adult\ \ (22 years) treated with 0.5 \u03BCM CpG ODN for 24 hours"]
HISTOGRAM FOR DNase-seq_ENCSR109DTU [0.0919, 31.8]
n
11,376,916
mean
3.18
sd
3.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 113769160.35% 48637
chr1 1120231 0.45% 4709
chr2 813693 0.34% 3489
chr3 581662 0.29% 2486
chr4 385549 0.20% 1607
chr5 500570 0.28% 2099
chr6 604805 0.35% 2512
chr7 522906 0.33% 2259
chr8 449741 0.31% 1998
chr9 477955 0.35% 2145
chr10 513264 0.38% 2218
chr11 636802 0.47% 2769
chr12 554726 0.42% 2341
chr13 188024 0.16% 809
chr14 375293 0.35% 1570
chr15 363256 0.36% 1594
chr16 493364 0.55% 2108
chr17 729959 0.88% 3125
chr18 186124 0.23% 800
chr19 767198 1.31% 3154
chr20 316999 0.49% 1401
chr21 153842 0.33% 700
chr22 321956 0.63% 1419
chrX 308143 0.20% 1284
chrY 10854 0.02% 41
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48637 1 1120 233.91 220
global segment-length histogram

Files

Filename Size md5
ENCFF027ZYL.bed.gz 524.62 KB 20af080a47d1c02be2080b7ed5fa2f13
ENCFF027ZYL.tabix.bed.gz 489.84 KB 1c1a34795d4918462a8406c18c1f567b
ENCFF027ZYL.tabix.bed.gz.tbi 198.53 KB e210dc088a7a453844c73422998f1c2a
genomic_resource.yaml 1.46 KB d472845ccaf15bb4dd0cd8b010e8098b
statistics/