DNase-seq_ENCSR106RBR
DNase-seq ENCSR106RBR [biosample_summary="Homo sapiens muscle of back tissue female embryo (115 days)"]
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| Id: | DNase-seq/ENCSR106RBR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR106RBR [biosample_summary="Homo sapiens muscle of back tissue female embryo (115 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (115 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN653OOU|/analyses/ENCAN653OOU/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF905ERI|/files/ENCFF905ERI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28988489 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF431YVH|/files/ENCFF431YVH/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28810799 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR106RBR | float |
DNase-seq_ENCSR106RBR |
DNase-seq ENCSR106RBR [biosample_summary="Homo sapiens muscle of back tissue female embryo (115 days)"]
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[4, 555] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF182YXK.bed.gz | 732.41 KB | 9ca5b74b3e638afb37579aef23b96d9b |
| ENCFF182YXK.bed.gz.dvc | 100.0 B | f20c59ec893c7b0e051dbdae9a061727 |
| ENCFF182YXK.tabix.bed.gz | 626.94 KB | db4758a5f47ae6d3c1f348d50eb62e01 |
| ENCFF182YXK.tabix.bed.gz.dvc | 106.0 B | 5aa65987e7a7e66362ff30f09d800ce7 |
| ENCFF182YXK.tabix.bed.gz.tbi | 392.17 KB | 7b05e2dd4b6ff168c7695a5bbe5db779 |
| ENCFF182YXK.tabix.bed.gz.tbi.dvc | 110.0 B | adf543b82208e09c39c511f8e63b01d3 |
| genomic_resource.yaml | 2.61 KB | 4c55e2b2b1253edcc0927c24597d1020 |
| genomic_resource_original.yaml | 2.5 KB | 39218ad5b80df78057ee050254f3776e |
| statistics/ |