Resource
| Id | DNase-seq/ENCSR106RBR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR106RBR [biosample_summary="Homo sapiens muscle of back tissue female embryo (115 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (115 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN653OOU|/analyses/ENCAN653OOU/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF905ERI|/files/ENCFF905ERI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28988489 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF431YVH|/files/ENCFF431YVH/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28810799 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR106RBR | float |
DNase-seq_ENCSR106RBR |
DNase-seq ENCSR106RBR [biosample_summary="Homo sapiens muscle of back tissue female embryo (115 days)"]
|
 |
[4, 555] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11376693 | 0.35% | 75485 |
| chr1 | 998696 | 0.40% | 6623 |
| chr2 | 935197 | 0.39% | 6208 |
| chr3 | 768233 | 0.39% | 5099 |
| chr4 | 633842 | 0.33% | 4192 |
| chr5 | 676229 | 0.37% | 4485 |
| chr6 | 715165 | 0.42% | 4747 |
| chr7 | 566080 | 0.36% | 3753 |
| chr8 | 565116 | 0.39% | 3744 |
| chr9 | 485624 | 0.35% | 3223 |
| chr10 | 555104 | 0.41% | 3685 |
| chr11 | 583700 | 0.43% | 3875 |
| chr12 | 552231 | 0.41% | 3667 |
| chr13 | 346671 | 0.30% | 2305 |
| chr14 | 354286 | 0.33% | 2353 |
| chr15 | 348703 | 0.34% | 2310 |
| chr16 | 339149 | 0.38% | 2250 |
| chr17 | 414820 | 0.50% | 2755 |
| chr18 | 269346 | 0.34% | 1790 |
| chr19 | 341924 | 0.58% | 2276 |
| chr20 | 261635 | 0.41% | 1736 |
| chr21 | 139594 | 0.30% | 921 |
| chr22 | 161800 | 0.32% | 1075 |
| chrX | 363098 | 0.23% | 2410 |
| chrY | 450 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 75485 | 25 | 504 | 150.71 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF182YXK.bed.gz | 732.41 KB | 9ca5b74b3e638afb37579aef23b96d9b |
| ENCFF182YXK.tabix.bed.gz | 626.94 KB | db4758a5f47ae6d3c1f348d50eb62e01 |
| ENCFF182YXK.tabix.bed.gz.tbi | 392.17 KB | 7b05e2dd4b6ff168c7695a5bbe5db779 |
| genomic_resource.yaml | 2.61 KB | 4c55e2b2b1253edcc0927c24597d1020 |
| statistics/ |