| Id: | DNase-seq/ENCSR104QUE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR104QUE [biosample_summary="Homo sapiens activated gamma-delta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours output_type: peaks audit_warning: Alignment file {ENCFF404MRF|/files/ENCFF404MRF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 47242858 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR104QUE | float |
DNase-seq_ENCSR104QUE |
DNase-seq ENCSR104QUE [biosample_summary="Homo sapiens activated gamma-delta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
|
 |
[0.255, 44.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF992MSV.bed.gz | 457.88 KB | 01950ec6a9a0886a195d35f9f13d83c9 |
| ENCFF992MSV.bed.gz.dvc | 100.0 B | a2b262cbadc2bf6e528146cec99156d0 |
| ENCFF992MSV.tabix.bed.gz | 416.99 KB | 105cebcea2e43bf440b43e3d5b2a7ea8 |
| ENCFF992MSV.tabix.bed.gz.dvc | 106.0 B | 232746b4abad9d46648e44aca0fc605e |
| ENCFF992MSV.tabix.bed.gz.tbi | 210.42 KB | 4270a8cdc8270da9540d1e674f926bad |
| ENCFF992MSV.tabix.bed.gz.tbi.dvc | 110.0 B | 71d9b4c41bb5ac285324c142a51fd906 |
| genomic_resource.yaml | 2.37 KB | 3ba7df962444360e887dff7bb4ad69a1 |
| genomic_resource_original.yaml | 2.17 KB | 2ae165641983e88fa4a26beb32cc698a |
| statistics/ |