DNase-seq_ENCSR101QXF
DNase-seq ENCSR101QXF [biosample_summary="Homo sapiens suprapubic skin tissue female adult (53 years)"]
×
| Id: | DNase-seq/ENCSR101QXF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR101QXF [biosample_summary="Homo sapiens suprapubic skin tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF134TIX|/files/ENCFF134TIX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR101QXF | float |
DNase-seq_ENCSR101QXF |
DNase-seq ENCSR101QXF [biosample_summary="Homo sapiens suprapubic skin tissue female adult (53 years)"]
|
|
[0.0383, 12.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF577YQU.bed.gz | 1.33 MB | 3d67123a829537b460b55ff34d150efe |
| ENCFF577YQU.bed.gz.dvc | 101.0 B | 94c62a18a63c4584df16941fbe15ee31 |
| ENCFF577YQU.tabix.bed.gz | 1.26 MB | f27ddeae1890cce84b045a113b26a959 |
| ENCFF577YQU.tabix.bed.gz.dvc | 107.0 B | 2492897e6bfe33725fc72a2609988da4 |
| ENCFF577YQU.tabix.bed.gz.tbi | 249.21 KB | 683442cda8d367fe020da34f853ba3d8 |
| ENCFF577YQU.tabix.bed.gz.tbi.dvc | 110.0 B | d9365f13176324f8d8a2ae4a1f1286ed |
| genomic_resource.yaml | 2.05 KB | aabdb77c953377a43b8089d57d537d80 |
| genomic_resource_original.yaml | 1.95 KB | c75c4b31ee09444894049df1b29ed396 |
| statistics/ |