DNase-seq_ENCSR101HFF
DNase-seq ENCSR101HFF [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (81 years)"]
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| Id: | DNase-seq/ENCSR101HFF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR101HFF [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (81 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (81 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF875ESV|/files/ENCFF875ESV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR101HFF | float |
DNase-seq_ENCSR101HFF |
DNase-seq ENCSR101HFF [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (81 years)"]
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[0.0409, 23.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF454EUR.bed.gz | 850.36 KB | 1a07cf2620b373eec908c93e15849069 |
| ENCFF454EUR.bed.gz.dvc | 100.0 B | 23737eeaa8400e101b12ed5ecacf41c3 |
| ENCFF454EUR.tabix.bed.gz | 780.85 KB | 937dfd3163758f5b1623a701a1fc1795 |
| ENCFF454EUR.tabix.bed.gz.dvc | 106.0 B | 29b5fd51f559fe9c8f829afa56e70733 |
| ENCFF454EUR.tabix.bed.gz.tbi | 304.46 KB | 4050390c7c649c6924531b6c41d02e40 |
| ENCFF454EUR.tabix.bed.gz.tbi.dvc | 110.0 B | 6129f1629b553f71fd0e881b8e6e6dc2 |
| genomic_resource.yaml | 2.21 KB | 0a212d863ef0b8bc89a2395850d9b6d2 |
| genomic_resource_original.yaml | 2.07 KB | aaed30a01767e2880c95b357809753c2 |
| statistics/ |