Resource

Id DNase-seq/ENCSR100OSBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR100OSB [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
Description
Labels
  • accession: ENCSR100OSB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000497/
  • biosample_summary: Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 16 hours
  • date_created: 2020-04-16T03:32:08.791391+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR100OSB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with 50 U/mL Interleukin-2 for 16 hours
  • status: released
  • submitter_comment: The biosample ontology on this experiment was previously NTR:0000496 (CD4-positive naive resting alpha-beta T cell). It has been updated to NTR:0000497 (activated CD4 positive, naive alpha-beta T cell) on 11/04/21.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR100OSB float

DNase-seq_ENCSR100OSB
DNase-seq ENCSR100OSB [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR100OSB [0.0602, 78.1]
n
14,349,339
mean
5.56
sd
8.71

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 143493390.45% 74123
chr1 1466269 0.59% 7521
chr2 1028374 0.42% 5365
chr3 761955 0.38% 3971
chr4 469858 0.25% 2399
chr5 626885 0.35% 3303
chr6 836035 0.49% 4307
chr7 638193 0.40% 3325
chr8 561600 0.39% 2914
chr9 587112 0.42% 3028
chr10 680827 0.51% 3532
chr11 727337 0.54% 3780
chr12 714792 0.54% 3681
chr13 283970 0.25% 1462
chr14 496694 0.46% 2559
chr15 465107 0.46% 2409
chr16 604301 0.67% 3091
chr17 870336 1.05% 4430
chr18 231378 0.29% 1196
chr19 894048 1.53% 4505
chr20 408547 0.63% 2137
chr21 166300 0.36% 880
chr22 358060 0.70% 1853
chrX 454397 0.29% 2384
chrY 16964 0.03% 91
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74123 1 860 193.59 180
global segment-length histogram

Files

Filename Size md5
ENCFF760FGA.bed.gz 840.11 KB c7e3f85e2367c4200d253e95f4290f1f
ENCFF760FGA.tabix.bed.gz 766.44 KB ad708365a20d394fa9aa3a966b1c2aaf
ENCFF760FGA.tabix.bed.gz.tbi 284.24 KB 2e31698b777d11b142544549477dd8d7
genomic_resource.yaml 1.77 KB c54e5290a6d7843f513b4b1a9eec3d9b
statistics/