DNase-seq_ENCSR098ISE
DNase-seq ENCSR098ISE [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR098ISE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR098ISE [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF189BYI|/files/ENCFF189BYI/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR098ISE | float |
DNase-seq_ENCSR098ISE |
DNase-seq ENCSR098ISE [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0317, 19.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF454AVH.bed.gz | 2.35 MB | c56bf12a3e2d53b8bff8d28f15edc656 |
| ENCFF454AVH.bed.gz.dvc | 101.0 B | 069eea68b03ef3c60581ec30a9429046 |
| ENCFF454AVH.tabix.bed.gz | 2.21 MB | 5fd8234a2abb62b877da5344fbf33dc2 |
| ENCFF454AVH.tabix.bed.gz.dvc | 107.0 B | a0fdd05bb3c920afb5fc797182bf47f0 |
| ENCFF454AVH.tabix.bed.gz.tbi | 327.79 KB | 4cd38e27e9ef2870d0905799e932cf23 |
| ENCFF454AVH.tabix.bed.gz.tbi.dvc | 110.0 B | a671966421c55090704e868284b33c5a |
| genomic_resource.yaml | 2.25 KB | dea23106f8d71412f4f16e34c4935708 |
| genomic_resource_original.yaml | 2.1 KB | 8ce5935562af3b525008e97e3bbcf547 |
| statistics/ |