DNase-seq_ENCSR097BWW
DNase-seq ENCSR097BWW [biosample_summary="Homo sapiens left kidney tissue female embryo (59 days) and male embryo (91 days)"]
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| Id: | DNase-seq/ENCSR097BWW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR097BWW [biosample_summary="Homo sapiens left kidney tissue female embryo (59 days) and male embryo (91 days)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female embryo (59 days) male embryo (91 days) output_type: peaks audit_warning: Alignment file {ENCFF644KLS|/files/ENCFF644KLS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30845622 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF644KLS|/files/ENCFF644KLS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR097BWW | float |
DNase-seq_ENCSR097BWW |
DNase-seq ENCSR097BWW [biosample_summary="Homo sapiens left kidney tissue female embryo (59 days) and male embryo (91 days)"]
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[0.0176, 28.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF058HYK.bed.gz | 3.01 MB | f6f572c85d321b9836cae28d7f607714 |
| ENCFF058HYK.bed.gz.dvc | 101.0 B | bcf16a1d3ee8b8907ce27dbeae36cebd |
| ENCFF058HYK.tabix.bed.gz | 2.75 MB | 10c0829ce1ed05f9deb3e1feb7c64690 |
| ENCFF058HYK.tabix.bed.gz.dvc | 107.0 B | c681eeb444ea04593eb179612e3f0f8a |
| ENCFF058HYK.tabix.bed.gz.tbi | 751.65 KB | a143e4691d59880825602ac1c16b186c |
| ENCFF058HYK.tabix.bed.gz.tbi.dvc | 110.0 B | f265bd6430b2b2a8ebe01d9d059b289c |
| genomic_resource.yaml | 2.78 KB | 5a7ba7a02f7cb9c3afc68811f5377939 |
| genomic_resource_original.yaml | 2.66 KB | d88f89df35f4f48d71f35e273dba5fe3 |
| statistics/ |