DNase-seq_ENCSR092OFK
DNase-seq ENCSR092OFK [biosample_summary="Homo sapiens skin of body tissue female embryo (82 days)"]
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| Id: | DNase-seq/ENCSR092OFK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR092OFK [biosample_summary="Homo sapiens skin of body tissue female embryo (82 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (82 days) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF198CSA|/files/ENCFF198CSA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.19. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN037KSW|/analyses/ENCAN037KSW/} has in progress subobject document {90e895a1-4b12-47f5-a824-deaedc7048b1|/documents/90e895a1-4b12-47f5-a824-deaedc7048b1/} audit_warning: Alignment file {ENCFF198CSA|/files/ENCFF198CSA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 32563147 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR092OFK | float |
DNase-seq_ENCSR092OFK |
DNase-seq ENCSR092OFK [biosample_summary="Homo sapiens skin of body tissue female embryo (82 days)"]
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[0.216, 18.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF950SDE.bed.gz | 374.32 KB | c15693638c1eb3003575345b0a32395e |
| ENCFF950SDE.bed.gz.dvc | 100.0 B | 5da9b588e6955972d2f5d6c10a030474 |
| ENCFF950SDE.tabix.bed.gz | 331.9 KB | 919621f2bf1a8bafbfd682ade3eb4e9b |
| ENCFF950SDE.tabix.bed.gz.dvc | 106.0 B | 8dc40a99e2ef94b46f27a1dd5c7ab30e |
| ENCFF950SDE.tabix.bed.gz.tbi | 244.51 KB | 217e272bc105c9c45761cc27acc1c3b6 |
| ENCFF950SDE.tabix.bed.gz.tbi.dvc | 110.0 B | 7b724bd881153e51efaedd10a33d8d51 |
| genomic_resource.yaml | 2.87 KB | 2f3d78a10d0721c6d5bac8cf3378270c |
| genomic_resource_original.yaml | 2.77 KB | 389bf678c53d0df51947d31d1b41e0a3 |
| statistics/ |