Resource

Id DNase-seq/ENCSR090SMPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR090SMP [biosample_summary="Homo sapiens NCI-H929"]
Description
Labels
  • accession: ENCSR090SMP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001221/
  • biosample_summary: Homo sapiens NCI-H929
  • date_created: 2019-09-15T05:05:11.631149+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR090SMP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR090SMP float

DNase-seq_ENCSR090SMP
DNase-seq ENCSR090SMP [biosample_summary="Homo sapiens NCI-H929"]
 HISTOGRAM FOR DNase-seq_ENCSR090SMP [0.0425, 73.5]
n
27,080,346
mean
2.6
sd
4.07

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 270803460.84% 142344
chr1 2568592 1.03% 13328
chr2 2049677 0.85% 10903
chr3 1630896 0.82% 8638
chr4 1269481 0.67% 6865
chr5 1548012 0.85% 8175
chr6 1579139 0.92% 8221
chr7 1291327 0.81% 6895
chr8 1285800 0.89% 6911
chr9 1112251 0.80% 5848
chr10 1224756 0.92% 6475
chr11 1438218 1.06% 7562
chr12 1255584 0.94% 6606
chr13 515579 0.45% 2792
chr14 869190 0.81% 4573
chr15 911963 0.89% 4770
chr16 1003099 1.11% 5118
chr17 1214677 1.46% 6197
chr18 589156 0.73% 3168
chr19 1168358 1.99% 5831
chr20 787926 1.22% 4102
chr21 304327 0.65% 1598
chr22 551838 1.09% 2832
chrX 908810 0.58% 4924
chrY 1690 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 142344 6 940 190.25 180
global segment-length histogram

Files

Filename Size md5
ENCFF757IJO.bed.gz 1.53 MB 0dd381f1fdea4de49628938ded09ab0d
ENCFF757IJO.tabix.bed.gz 1.41 MB f18d0012ab62368beb09ed1ac60f7ef0
ENCFF757IJO.tabix.bed.gz.tbi 535.02 KB f42acf2327c44a9677fe3fb77f29ad1d
genomic_resource.yaml 1.07 KB 1617aa2bdf76eba00455df5d40234509
statistics/