Resource

Id DNase-seq/ENCSR090IDVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR090IDV [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR090IDV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007610/
  • biosample_summary: Homo sapiens tibial artery tissue male adult (54 years)
  • date_created: 2019-08-18T16:57:11.854613+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR090IDV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR090IDV float

DNase-seq_ENCSR090IDV
DNase-seq ENCSR090IDV [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR090IDV [4, 1.75e+04]
n
15,455,803
mean
150
sd
234

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 154558030.48% 102633
chr1 1447540 0.58% 9606
chr2 1399757 0.58% 9297
chr3 884377 0.45% 5875
chr4 560346 0.29% 3715
chr5 768553 0.42% 5101
chr6 743081 0.44% 4930
chr7 691083 0.43% 4591
chr8 709359 0.49% 4718
chr9 690354 0.50% 4577
chr10 896006 0.67% 5957
chr11 930766 0.69% 6174
chr12 676349 0.51% 4490
chr13 293266 0.26% 1949
chr14 540109 0.50% 3580
chr15 546782 0.54% 3632
chr16 542677 0.60% 3612
chr17 719109 0.86% 4786
chr18 291174 0.36% 1939
chr19 566906 0.97% 3770
chr20 458061 0.71% 3039
chr21 265330 0.57% 1761
chr22 478058 0.94% 3167
chrX 343152 0.22% 2276
chrY 13608 0.02% 91
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 102633 3 450 150.59 150
global segment-length histogram

Files

Filename Size md5
ENCFF601CWS.bed.gz 1000.33 KB 81d67c677579ce9bab462ab0b1d34f25
ENCFF601CWS.tabix.bed.gz 856.48 KB c7f901f29c09f55306930b3296027d86
ENCFF601CWS.tabix.bed.gz.tbi 307.45 KB 25673d6fe1728a6377ba8b506aee71f6
genomic_resource.yaml 1.39 KB c6d4b05e1b070dbcfa9d66526cfb4e98
statistics/