DNase-seq_ENCSR086PIL
DNase-seq ENCSR086PIL [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR086PIL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR086PIL [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF259SZT|/files/ENCFF259SZT/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR086PIL | float |
DNase-seq_ENCSR086PIL |
DNase-seq ENCSR086PIL [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0853, 10.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF615PSI.bed.gz | 530.6 KB | 905bdc84957951d93e1c082d8415ec42 |
| ENCFF615PSI.bed.gz.dvc | 100.0 B | e33e887d9e59e4d2b17ff0a691990452 |
| ENCFF615PSI.tabix.bed.gz | 483.21 KB | aa0c88f57c19380505de802320fb3224 |
| ENCFF615PSI.tabix.bed.gz.dvc | 106.0 B | 88d1aaebb17a76a8bdeafd13c2c6d94d |
| ENCFF615PSI.tabix.bed.gz.tbi | 223.58 KB | 7dc8b56e5cc916fd9d4adba298eeff6b |
| ENCFF615PSI.tabix.bed.gz.tbi.dvc | 110.0 B | c95e12f802fc6edec166cf8c2d82f6b6 |
| genomic_resource.yaml | 2.25 KB | 8d2be2aa74a77c406ea9a92d180e4437 |
| genomic_resource_original.yaml | 2.1 KB | 760e2c37ef3c8c1f6e68a9daf2af8b53 |
| statistics/ |