Resource

Id DNase-seq/ENCSR086FTPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR086FTP [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR086FTP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-20T23:45:25.774584+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR086FTP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR086FTP float

DNase-seq_ENCSR086FTP
DNase-seq ENCSR086FTP [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR086FTP [0.441, 41.7]
n
5,832,968
mean
6.5
sd
5.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 58329680.18% 31219
chr1 601891 0.24% 3234
chr2 402801 0.17% 2175
chr3 310721 0.16% 1680
chr4 197431 0.10% 1054
chr5 252478 0.14% 1361
chr6 328075 0.19% 1768
chr7 269852 0.17% 1456
chr8 207569 0.14% 1143
chr9 234828 0.17% 1236
chr10 247133 0.18% 1324
chr11 303772 0.22% 1626
chr12 299622 0.22% 1591
chr13 113383 0.10% 595
chr14 206642 0.19% 1095
chr15 188311 0.18% 1023
chr16 249082 0.28% 1309
chr17 371249 0.45% 2014
chr18 86113 0.11% 462
chr19 430422 0.73% 2218
chr20 162138 0.25% 890
chr21 66657 0.14% 356
chr22 143669 0.28% 773
chrX 152974 0.10% 805
chrY 6155 0.01% 31
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31219 9 680 186.84 180
global segment-length histogram

Files

Filename Size md5
ENCFF912AVR.bed.gz 342.27 KB 994716cf5552d4198f617b6c2980d2bd
ENCFF912AVR.tabix.bed.gz 306.96 KB f21bdc2df1ec34dfb637971290e659fa
ENCFF912AVR.tabix.bed.gz.tbi 179.24 KB 4aafb6d1569bf993629caa5dc942d3ae
genomic_resource.yaml 1.87 KB 22c02227a4068a7cd0df46ee11bad4aa
statistics/