DNase-seq_ENCSR085XKS
DNase-seq ENCSR085XKS [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue male adult (80 years)"]
×
| Id: | DNase-seq/ENCSR085XKS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR085XKS [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue male adult (80 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (80 years) with Cognitive impairment, Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF226FYG|/files/ENCFF226FYG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR085XKS | float |
DNase-seq_ENCSR085XKS |
DNase-seq ENCSR085XKS [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue male adult (80 years)"]
|
|
[0.0469, 15.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF427TKQ.bed.gz | 862.13 KB | 43d4663926c902b12c09e9c91605acc8 |
| ENCFF427TKQ.bed.gz.dvc | 100.0 B | f96fd4d83bf078202d8029ea6854eb1c |
| ENCFF427TKQ.tabix.bed.gz | 786.49 KB | 28dda26bba6fc9a11d23c443748ec915 |
| ENCFF427TKQ.tabix.bed.gz.dvc | 106.0 B | ce1a6d6bb2155899d29bd08b82aee0b6 |
| ENCFF427TKQ.tabix.bed.gz.tbi | 318.61 KB | 6e84b7b0f732f5aa4046d963bcb49fe7 |
| ENCFF427TKQ.tabix.bed.gz.tbi.dvc | 110.0 B | 2ebd42bb556da6d4df0f01b6fb47ef8b |
| genomic_resource.yaml | 2.32 KB | 9909d8b8d86a0c9153054566542d78c4 |
| genomic_resource_original.yaml | 2.15 KB | f96eaa274545a5ec7de058f26df30f83 |
| statistics/ |