Resource

Id DNase-seq/ENCSR085MZLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR085MZL [biosample_summary="Homo sapiens Right ventricle myocardium inferior tissue male adult (60 years)"]
Description
Labels
  • accession: ENCSR085MZL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0000491/
  • biosample_summary: Homo sapiens Right ventricle myocardium inferior tissue male adult (60 years)
  • date_created: 2019-02-01T20:31:16.339066+00:00
  • date_released: 2021-02-09
  • doi: 10.17989/ENCSR085MZL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (60 years)
  • status: released
  • submitter_comment: A dispersion model could not be successfully generated for this dataset, so the DNase-seq pipeline's footprinting step was skipped for this analysis.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR085MZL float

DNase-seq_ENCSR085MZL
DNase-seq ENCSR085MZL [biosample_summary="Homo sapiens Right ventricle myocardium inferior tissue male adult (60 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR085MZL [0.0339, 46.1]
n
26,928,896
mean
1.45
sd
2.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 269288960.84% 162314
chr1 2385715 0.96% 14246
chr2 1912326 0.79% 11689
chr3 1234363 0.62% 7686
chr4 1264747 0.66% 7747
chr5 1114834 0.61% 7077
chr6 953362 0.56% 5960
chr7 1504541 0.94% 9111
chr8 1123896 0.77% 6768
chr9 1463359 1.06% 8725
chr10 1162958 0.87% 7067
chr11 1589637 1.18% 9450
chr12 1025118 0.77% 6286
chr13 475127 0.42% 3054
chr14 850860 0.79% 5056
chr15 742882 0.73% 4506
chr16 1315231 1.46% 7705
chr17 1792980 2.15% 10475
chr18 359676 0.45% 2319
chr19 1802696 3.08% 10427
chr20 879897 1.37% 5152
chr21 466034 1.00% 2711
chr22 1093841 2.15% 6367
chrX 393551 0.25% 2569
chrY 21265 0.04% 161
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 162314 4 780 165.91 160
global segment-length histogram

Files

Filename Size md5
ENCFF616WCY.bed.gz 1.63 MB 6c8a2cd86680e4e3af2e935c2569339a
ENCFF616WCY.tabix.bed.gz 1.49 MB d5255b302c1cbc42c2bdcf95a9a858b2
ENCFF616WCY.tabix.bed.gz.tbi 379.68 KB cdfa2b752a9807d18a7904be9bc85110
genomic_resource.yaml 1.54 KB 2540ccde6cb722bc07869bc9c83463b7
statistics/