Resource

Id DNase-seq/ENCSR083STAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR083STA [biosample_summary="Homo sapiens MG63"]
Description
Labels
  • accession: ENCSR083STA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002234/
  • biosample_summary: Homo sapiens MG63
  • date_created: 2014-06-20T22:02:57.403712+00:00
  • date_released: 2015-08-18
  • doi: 10.17989/ENCSR083STA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR083STA float

DNase-seq_ENCSR083STA
DNase-seq ENCSR083STA [biosample_summary="Homo sapiens MG63"]
 HISTOGRAM FOR DNase-seq_ENCSR083STA [0.0283, 149]
n
45,171,950
mean
1.73
sd
3.33

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 451719501.40% 225043
chr1 4118509 1.65% 20455
chr2 3869906 1.60% 19346
chr3 3028825 1.53% 15096
chr4 2286925 1.20% 11585
chr5 3097358 1.71% 15239
chr6 2882674 1.69% 14162
chr7 2095741 1.32% 10640
chr8 2774036 1.91% 13654
chr9 1898047 1.37% 9330
chr10 2170844 1.62% 10822
chr11 2146342 1.59% 10672
chr12 2207955 1.66% 11048
chr13 1285324 1.12% 6476
chr14 1191872 1.11% 5979
chr15 1453178 1.42% 7225
chr16 1254402 1.39% 6284
chr17 1612165 1.94% 7907
chr18 981950 1.22% 4971
chr19 1078408 1.84% 5344
chr20 1107258 1.72% 5516
chr21 563233 1.21% 2777
chr22 652409 1.28% 3247
chrX 1310119 0.84% 6729
chrY 104470 0.18% 539
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 225043 1 1180 200.73 200
global segment-length histogram

Files

Filename Size md5
ENCFF148ZHS.bed.gz 2.41 MB 7389de0fe60d7d81d12118481ace067e
ENCFF148ZHS.tabix.bed.gz 2.2 MB e6b3c1fd4522d5cb7e364b830298cf1c
ENCFF148ZHS.tabix.bed.gz.tbi 722.13 KB 44841fe32600a3cc026528c93a62b8e0
genomic_resource.yaml 1.69 KB bfc65611ff6d9f78e18a236b477608a9
statistics/