| Id: | DNase-seq/ENCSR083STA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR083STA [biosample_summary="Homo sapiens MG63"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF785KVP|/files/ENCFF785KVP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 45520891 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR083STA | float |
DNase-seq_ENCSR083STA |
DNase-seq ENCSR083STA [biosample_summary="Homo sapiens MG63"]
|
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[0.0283, 149] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF148ZHS.bed.gz | 2.41 MB | 7389de0fe60d7d81d12118481ace067e |
| ENCFF148ZHS.bed.gz.dvc | 101.0 B | 84416aa81952966fce8da8a3dfcf5355 |
| ENCFF148ZHS.tabix.bed.gz | 2.2 MB | e6b3c1fd4522d5cb7e364b830298cf1c |
| ENCFF148ZHS.tabix.bed.gz.dvc | 107.0 B | 4a314a91bc86f7eab80e73476f4529f1 |
| ENCFF148ZHS.tabix.bed.gz.tbi | 722.13 KB | 44841fe32600a3cc026528c93a62b8e0 |
| ENCFF148ZHS.tabix.bed.gz.tbi.dvc | 110.0 B | d50c2ca5580da392ecf09dbe3c2f18a8 |
| genomic_resource.yaml | 1.69 KB | bfc65611ff6d9f78e18a236b477608a9 |
| genomic_resource_original.yaml | 1.63 KB | e3945da673a66b3b79bf6551f835712c |
| statistics/ |