DNase-seq_ENCSR083HYP
DNase-seq ENCSR083HYP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR083HYP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR083HYP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF655QXW|/files/ENCFF655QXW/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR083HYP | float |
DNase-seq_ENCSR083HYP |
DNase-seq ENCSR083HYP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0622, 10.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF854UOQ.bed.gz | 749.47 KB | f30ce56e44090ee27d41ce8be75b97ad |
| ENCFF854UOQ.bed.gz.dvc | 100.0 B | 9633618331da40c08d4500064d3833c6 |
| ENCFF854UOQ.tabix.bed.gz | 692.22 KB | 6e4e196b5b666e8bcdec301054236a74 |
| ENCFF854UOQ.tabix.bed.gz.dvc | 106.0 B | cfdd1f768ce1d948ef2801f418e3280c |
| ENCFF854UOQ.tabix.bed.gz.tbi | 213.96 KB | 4b496d8f6b646491e0f48e23dc0e3990 |
| ENCFF854UOQ.tabix.bed.gz.tbi.dvc | 110.0 B | e27cf842a0f213a4a94c58cdd0f217de |
| genomic_resource.yaml | 2.12 KB | 41d8a50cae8a34d3c39a17e8b5c931a4 |
| genomic_resource_original.yaml | 2.0 KB | 582717c792e1ffe1000e0cc1c019b9c0 |
| statistics/ |