DNase-seq_ENCSR082PDJ
DNase-seq ENCSR082PDJ [biosample_summary="Homo sapiens psoas muscle tissue female child (16 years)"]
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| Id: | DNase-seq/ENCSR082PDJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR082PDJ [biosample_summary="Homo sapiens psoas muscle tissue female child (16 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF609OFI|/files/ENCFF609OFI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR082PDJ | float |
DNase-seq_ENCSR082PDJ |
DNase-seq ENCSR082PDJ [biosample_summary="Homo sapiens psoas muscle tissue female child (16 years)"]
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[0.0475, 15.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF581OTH.bed.gz | 695.31 KB | 807999b257acfca69d3335e82229328d |
| ENCFF581OTH.bed.gz.dvc | 100.0 B | f556b5c6614e8c6103a85da280cec15d |
| ENCFF581OTH.tabix.bed.gz | 634.46 KB | 7d0cc8b0bb47e3b0730faa7f0c0c44e6 |
| ENCFF581OTH.tabix.bed.gz.dvc | 106.0 B | 8ba9ad89788878b193812aa419f7cd51 |
| ENCFF581OTH.tabix.bed.gz.tbi | 256.07 KB | ba36685e08564209b2a048e1554d589a |
| ENCFF581OTH.tabix.bed.gz.tbi.dvc | 110.0 B | dba5b2c4172d798fe7902c40b6bed0f3 |
| genomic_resource.yaml | 2.04 KB | 32748562b55ef57b830205b25ec9b025 |
| genomic_resource_original.yaml | 1.94 KB | f6374434cc87a4e3be75f0a36e97eb14 |
| statistics/ |