DNase-seq_ENCSR080PZL
DNase-seq ENCSR080PZL [biosample_summary="Homo sapiens adrenal gland tissue male embryo (101 days)"]
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| Id: | DNase-seq/ENCSR080PZL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR080PZL [biosample_summary="Homo sapiens adrenal gland tissue male embryo (101 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (101 days) output_type: peaks audit_warning: Alignment file {ENCFF511DEJ|/files/ENCFF511DEJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 47301584 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF511DEJ|/files/ENCFF511DEJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR080PZL | float |
DNase-seq_ENCSR080PZL |
DNase-seq ENCSR080PZL [biosample_summary="Homo sapiens adrenal gland tissue male embryo (101 days)"]
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[0.149, 16.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF230LFX.bed.gz | 719.76 KB | fe5a26db06a1ca584aa8e4619a21bb05 |
| ENCFF230LFX.bed.gz.dvc | 100.0 B | 99ea07c11003b1287c301c24bad1bc84 |
| ENCFF230LFX.tabix.bed.gz | 645.9 KB | c03958ffb67132f8fddce14b47618cd7 |
| ENCFF230LFX.tabix.bed.gz.dvc | 106.0 B | cb58713cd34958f0464e1fd5220c9977 |
| ENCFF230LFX.tabix.bed.gz.tbi | 366.94 KB | b0e5df5aeba568e9b510289e8745f35a |
| ENCFF230LFX.tabix.bed.gz.tbi.dvc | 110.0 B | bf9077dd442c5d1d236b820cf743b368 |
| genomic_resource.yaml | 2.66 KB | 42e769b6f6eb05eef7404afa03f04a87 |
| genomic_resource_original.yaml | 2.56 KB | e62e0b465c1b1fb6d8dc8e4ee6824c24 |
| statistics/ |