DNase-seq_ENCSR080ISA
DNase-seq ENCSR080ISA [biosample_summary="Homo sapiens tibial artery tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR080ISA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR080ISA [biosample_summary="Homo sapiens tibial artery tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN263JGZ|/analyses/ENCAN263JGZ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF656IUA|/files/ENCFF656IUA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR080ISA | float |
DNase-seq_ENCSR080ISA |
DNase-seq ENCSR080ISA [biosample_summary="Homo sapiens tibial artery tissue female adult (53 years)"]
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[1, 7.07e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF048ZGK.bed.gz | 2.93 MB | 774813e78bd8c94a62880791062307ea |
| ENCFF048ZGK.bed.gz.dvc | 101.0 B | 65a6f68c90f9ba498f59b0cbfeeb9c0e |
| ENCFF048ZGK.tabix.bed.gz | 2.51 MB | 195b560e6f7297ca94026b46f6c66a41 |
| ENCFF048ZGK.tabix.bed.gz.dvc | 107.0 B | 62e844a45e01f302905e3ad3955b7625 |
| ENCFF048ZGK.tabix.bed.gz.tbi | 463.26 KB | 1989318dc1c5ce690761a7bb95f839ee |
| ENCFF048ZGK.tabix.bed.gz.tbi.dvc | 110.0 B | 7f7215a9ab5261ba1d182b11a2162618 |
| genomic_resource.yaml | 2.21 KB | 34b9d3749cfda58651ad319d645a7df3 |
| genomic_resource_original.yaml | 2.1 KB | 26d22c33c3491839ba06a62af465a080 |
| statistics/ |