| Id: | DNase-seq/ENCSR075MQZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR075MQZ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF366GCV|/files/ENCFF366GCV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41208098 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR075MQZ | float |
DNase-seq_ENCSR075MQZ |
DNase-seq ENCSR075MQZ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"]
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[0.243, 50.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF704UQE.bed.gz | 588.91 KB | 7af713fa39af5597622636a6dd67bc17 |
| ENCFF704UQE.bed.gz.dvc | 100.0 B | a9f34afd9375547c4d20fc94945c4bef |
| ENCFF704UQE.tabix.bed.gz | 534.01 KB | 2c84fab47a950f95b2c5e1a1b4ffd725 |
| ENCFF704UQE.tabix.bed.gz.dvc | 106.0 B | 67c86114ef6b0e5e1e0017d69d8e16e2 |
| ENCFF704UQE.tabix.bed.gz.tbi | 256.68 KB | 71ecb5ad93fd5cb1b803ebb646e51e22 |
| ENCFF704UQE.tabix.bed.gz.tbi.dvc | 110.0 B | f3e1aed339b82c5d7f3645c5b14f3b5a |
| genomic_resource.yaml | 2.78 KB | a6638470d9f00b6874c77b651659fd39 |
| genomic_resource_original.yaml | 2.5 KB | dcd3f770d3f215d51dbf5978bfd644b9 |
| statistics/ |