Resource

Id DNase-seq/ENCSR072NBRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR072NBR [biosample_summary="Homo sapiens muscle of back tissue female embryo (98 days)"]
Description
Labels
  • accession: ENCSR072NBR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002324/
  • biosample_summary: Homo sapiens muscle of back tissue female embryo (98 days)
  • date_created: 2015-09-16T21:42:58.606109+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR072NBR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (98 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR072NBR float

DNase-seq_ENCSR072NBR
DNase-seq ENCSR072NBR [biosample_summary="Homo sapiens muscle of back tissue female embryo (98 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR072NBR [0.246, 36.7]
n
11,288,063
mean
3.49
sd
3.71

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 112880630.35% 64681
chr1 1006546 0.40% 5761
chr2 911989 0.38% 5244
chr3 735972 0.37% 4230
chr4 579256 0.30% 3361
chr5 645664 0.36% 3716
chr6 697477 0.41% 4021
chr7 560583 0.35% 3274
chr8 538342 0.37% 3078
chr9 483480 0.35% 2764
chr10 538978 0.40% 3129
chr11 584922 0.43% 3327
chr12 558077 0.42% 3202
chr13 311128 0.27% 1801
chr14 358239 0.33% 2049
chr15 359295 0.35% 2052
chr16 346252 0.38% 1971
chr17 454041 0.55% 2524
chr18 252261 0.31% 1480
chr19 424806 0.72% 2267
chr20 283215 0.44% 1645
chr21 127309 0.27% 742
chr22 187692 0.37% 1070
chrX 342239 0.22% 1971
chrY 300 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64681 2 680 174.52 174
global segment-length histogram

Files

Filename Size md5
ENCFF501AWD.bed.gz 692.72 KB a5b2bf3b97e103ec53348717e6fc9b20
ENCFF501AWD.tabix.bed.gz 614.77 KB 00c423148944f6fa2c3d6837d0f801fe
ENCFF501AWD.tabix.bed.gz.tbi 359.06 KB 810a82855a9c08fe515b5cc9c97273a9
genomic_resource.yaml 1.85 KB 2aac397dbf400564133de05d4a84e8f2
statistics/