DNase-seq_ENCSR070CMW
DNase-seq ENCSR070CMW [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR070CMW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR070CMW [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN294NCH|/analyses/ENCAN294NCH/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF037AJZ|/files/ENCFF037AJZ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR070CMW | float |
DNase-seq_ENCSR070CMW |
DNase-seq ENCSR070CMW [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)"]
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[1, 7.45e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF146VYU.bed.gz | 3.2 MB | dc044f90917efb396bb5b394c0650bba |
| ENCFF146VYU.bed.gz.dvc | 101.0 B | fc0b0fa629f8684b99385c3553384aa3 |
| ENCFF146VYU.tabix.bed.gz | 2.76 MB | bf813733fd83f42df6b745edd1386325 |
| ENCFF146VYU.tabix.bed.gz.dvc | 107.0 B | 97cf9682e79f33e85cc8373c0870c142 |
| ENCFF146VYU.tabix.bed.gz.tbi | 509.34 KB | e3eb4e6a978826005119d314a909e2ac |
| ENCFF146VYU.tabix.bed.gz.tbi.dvc | 110.0 B | 5e5d41cc4bc6c43e76c709a20776d629 |
| genomic_resource.yaml | 2.23 KB | b23ebf94e6a29584b040273ca091f9ca |
| genomic_resource_original.yaml | 2.12 KB | 9cf1365be1905f4b7ff5b1346759dc84 |
| statistics/ |