Resource
| Id | DNase-seq/ENCSR070CMW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR070CMW [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN294NCH|/analyses/ENCAN294NCH/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF037AJZ|/files/ENCFF037AJZ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR070CMW | float |
DNase-seq_ENCSR070CMW |
DNase-seq ENCSR070CMW [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)"]
|
 |
[1, 7.45e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53696667 | 1.67% | 356672 |
| chr1 | 4494922 | 1.81% | 29853 |
| chr2 | 5069600 | 2.09% | 33662 |
| chr3 | 3087725 | 1.56% | 20508 |
| chr4 | 1971487 | 1.04% | 13096 |
| chr5 | 2869636 | 1.58% | 19075 |
| chr6 | 2823505 | 1.65% | 18757 |
| chr7 | 2699994 | 1.69% | 17934 |
| chr8 | 2708123 | 1.87% | 17985 |
| chr9 | 2344648 | 1.69% | 15550 |
| chr10 | 3469354 | 2.59% | 23045 |
| chr11 | 2654561 | 1.97% | 17631 |
| chr12 | 2049965 | 1.54% | 13617 |
| chr13 | 1383773 | 1.21% | 9186 |
| chr14 | 1574505 | 1.47% | 10457 |
| chr15 | 2071868 | 2.03% | 13784 |
| chr16 | 1916735 | 2.12% | 12730 |
| chr17 | 1920798 | 2.31% | 12763 |
| chr18 | 1502041 | 1.87% | 9976 |
| chr19 | 1442393 | 2.46% | 9578 |
| chr20 | 1680804 | 2.61% | 11180 |
| chr21 | 831918 | 1.78% | 5529 |
| chr22 | 1147220 | 2.26% | 7617 |
| chrX | 1939092 | 1.24% | 12880 |
| chrY | 42000 | 0.07% | 279 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 356672 | 1 | 450 | 150.55 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF146VYU.bed.gz | 3.2 MB | dc044f90917efb396bb5b394c0650bba |
| ENCFF146VYU.tabix.bed.gz | 2.76 MB | bf813733fd83f42df6b745edd1386325 |
| ENCFF146VYU.tabix.bed.gz.tbi | 509.34 KB | e3eb4e6a978826005119d314a909e2ac |
| genomic_resource.yaml | 2.23 KB | b23ebf94e6a29584b040273ca091f9ca |
| statistics/ |