Resource

Id DNase-seq/ENCSR069ICJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR069ICJ [biosample_summary="Homo sapiens suppressor macrophage male adult (21 years) treated with lipopolysaccharide for 4 hours"]
Description
Labels
  • accession: ENCSR069ICJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000862/
  • biosample_summary: Homo sapiens suppressor macrophage male adult (21 years) treated with lipopolysaccharide for 4 hours
  • date_created: 2018-11-29T17:38:16.164878+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR069ICJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years) treated with lipopolysaccharide for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR069ICJ float

DNase-seq_ENCSR069ICJ
DNase-seq ENCSR069ICJ [biosample_summary="Homo sapiens suppressor macrophage male adult (21 years) treated with lipopolysaccharide for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR069ICJ [0.0417, 25.5]
n
34,676,651
mean
2.16
sd
2.67

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 346766511.08% 184854
chr1 3356377 1.35% 17811
chr2 2791253 1.15% 14858
chr3 2279371 1.15% 12164
chr4 1528269 0.80% 8231
chr5 1849047 1.02% 9956
chr6 2172341 1.27% 11438
chr7 1697017 1.06% 9118
chr8 1585788 1.09% 8419
chr9 1454649 1.05% 7801
chr10 1711159 1.28% 9174
chr11 1705274 1.26% 9070
chr12 1783882 1.34% 9490
chr13 825624 0.72% 4452
chr14 1112098 1.04% 5945
chr15 1159349 1.14% 6195
chr16 1090830 1.21% 5835
chr17 1592399 1.91% 8342
chr18 736483 0.92% 3933
chr19 1244520 2.12% 6536
chr20 938194 1.46% 5034
chr21 425725 0.91% 2251
chr22 653957 1.29% 3459
chrX 943503 0.60% 5128
chrY 39542 0.07% 214
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 184854 3 880 187.59 180
global segment-length histogram

Files

Filename Size md5
ENCFF917EFX.bed.gz 1.99 MB 10c99c4bb51d275876af281c4a33ab10
ENCFF917EFX.tabix.bed.gz 1.81 MB 7bf4547cd644a406079ae4b8f7626878
ENCFF917EFX.tabix.bed.gz.tbi 547.04 KB 5c5f46cd09cba9239b4cd4ad938c6cd0
genomic_resource.yaml 1.45 KB 2c2ea41246d706b3c14f4dc7ba223b07
statistics/