Resource

Id DNase-seq/ENCSR066WZJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR066WZJ [biosample_summary="Homo sapiens kidney tissue embryo (80 days)"]
Description
Labels
  • accession: ENCSR066WZJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue embryo (80 days)
  • date_created: 2015-03-27T17:25:02.602527+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR066WZJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (80 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR066WZJ float

DNase-seq_ENCSR066WZJ
DNase-seq ENCSR066WZJ [biosample_summary="Homo sapiens kidney tissue embryo (80 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR066WZJ [1, 7.78e+03]
n
46,007,623
mean
161
sd
256

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 460076231.43% 306161
chr1 3998357 1.61% 26617
chr2 3839909 1.59% 25553
chr3 2940523 1.48% 19560
chr4 2543835 1.34% 16909
chr5 2600231 1.43% 17294
chr6 2770627 1.62% 18431
chr7 2443830 1.53% 16258
chr8 2170922 1.50% 14452
chr9 1940651 1.40% 12925
chr10 2326537 1.74% 15476
chr11 2270824 1.68% 15123
chr12 2181751 1.64% 14523
chr13 1370541 1.20% 9125
chr14 1447402 1.35% 9638
chr15 1493315 1.46% 9929
chr16 1480616 1.64% 9862
chr17 1796452 2.16% 11956
chr18 1194347 1.49% 7949
chr19 1247166 2.13% 8308
chr20 1197280 1.86% 7972
chr21 551315 1.18% 3665
chr22 789991 1.55% 5253
chrX 1386301 0.89% 9217
chrY 24900 0.04% 166
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 306161 8 450 150.27 150
global segment-length histogram

Files

Filename Size md5
ENCFF136JFN.bed.gz 2.89 MB f5034a7d09b36575581dc8ee5880ce15
ENCFF136JFN.tabix.bed.gz 2.49 MB 9a8549f835e531def2894ec404bf0ade
ENCFF136JFN.tabix.bed.gz.tbi 799.17 KB 92d68dabda3db0dccce0ba152148682b
genomic_resource.yaml 1.35 KB ee344b6099d7d3c966ea4e1fcdaf3198
statistics/