DNase-seq_ENCSR062DXC
DNase-seq ENCSR062DXC [biosample_summary="Homo sapiens muscle of arm tissue female embryo (115 days)"]
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| Id: | DNase-seq/ENCSR062DXC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR062DXC [biosample_summary="Homo sapiens muscle of arm tissue female embryo (115 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (115 days) output_type: peaks audit_warning: Alignment file {ENCFF845KHW|/files/ENCFF845KHW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 23043593 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF845KHW|/files/ENCFF845KHW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR062DXC | float |
DNase-seq_ENCSR062DXC |
DNase-seq ENCSR062DXC [biosample_summary="Homo sapiens muscle of arm tissue female embryo (115 days)"]
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[0.305, 10.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF349WKN.bed.gz | 305.09 KB | ebba05dd27f45c8261687609f7f00b15 |
| ENCFF349WKN.bed.gz.dvc | 100.0 B | 1295232aaefd3369d8af1218c3416ac9 |
| ENCFF349WKN.tabix.bed.gz | 272.43 KB | 3d832d3f3ef26a01782c2122d25552d4 |
| ENCFF349WKN.tabix.bed.gz.dvc | 106.0 B | a7b94fefd5f01e74d7dc2e239c7592fd |
| ENCFF349WKN.tabix.bed.gz.tbi | 184.97 KB | 939bdf9043e0736089d2dbeb5e1e2cf7 |
| ENCFF349WKN.tabix.bed.gz.tbi.dvc | 110.0 B | 7a5dad236b1dcd71b349768a1410cc71 |
| genomic_resource.yaml | 2.67 KB | 0d2fcb3ad6cb735ec377465547fbc517 |
| genomic_resource_original.yaml | 2.57 KB | 1b4561b88f2e4fea2f1942f6d93b2ec5 |
| statistics/ |