DNase-seq_ENCSR060ZXQ
DNase-seq ENCSR060ZXQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
×
| Id: | DNase-seq/ENCSR060ZXQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR060ZXQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: peaks audit_warning: Alignment file {ENCFF031GZH|/files/ENCFF031GZH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 34386602 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR060ZXQ | float |
DNase-seq_ENCSR060ZXQ |
DNase-seq ENCSR060ZXQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
|
|
[0.321, 40.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF483MAS.bed.gz | 414.52 KB | 3e9d37ee0e4473f92bc12930491a8164 |
| ENCFF483MAS.bed.gz.dvc | 100.0 B | b3d9397e6835addb12533ef08ae2f28b |
| ENCFF483MAS.tabix.bed.gz | 376.49 KB | 2ec7ecf072f48b31d40c07f7559805cf |
| ENCFF483MAS.tabix.bed.gz.dvc | 106.0 B | 7dc2fd5166321a8eebf344b2949a8896 |
| ENCFF483MAS.tabix.bed.gz.tbi | 201.52 KB | b3e92a87f3c3419e6239583d6def0c71 |
| ENCFF483MAS.tabix.bed.gz.tbi.dvc | 110.0 B | d069e03d3752255d70065abcadec7a70 |
| genomic_resource.yaml | 1.88 KB | bd2e9f54116502ec071a2e1c948ace5f |
| genomic_resource_original.yaml | 1.77 KB | 773044a0a91deeb7e028a45e2f48ccd1 |
| statistics/ |