DNase-seq_ENCSR060UPU
DNase-seq ENCSR060UPU [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (89 years)"]
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| Id: | DNase-seq/ENCSR060UPU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR060UPU [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (89 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (89 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF261WPP|/files/ENCFF261WPP/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR060UPU | float |
DNase-seq_ENCSR060UPU |
DNase-seq ENCSR060UPU [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (89 years)"]
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[0.0757, 16.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF662LUB.bed.gz | 792.19 KB | 2412f9cb6f33cac4754baec9b36833bb |
| ENCFF662LUB.bed.gz.dvc | 100.0 B | 6c659053d9c730b7c0eba6a984f3d5fc |
| ENCFF662LUB.tabix.bed.gz | 721.3 KB | c693e4aaf4f7d6a1d9b7551319de9eee |
| ENCFF662LUB.tabix.bed.gz.dvc | 106.0 B | 5647b13c5c4cce2dda0b1d59bf13dc13 |
| ENCFF662LUB.tabix.bed.gz.tbi | 284.5 KB | a8088e8801451538d38e84584ed02cbf |
| ENCFF662LUB.tabix.bed.gz.tbi.dvc | 110.0 B | 827a23393fd7aa813f56033d721a89e3 |
| genomic_resource.yaml | 2.21 KB | 742599c9fd5ad5e8f4b9b13c0e425ac3 |
| genomic_resource_original.yaml | 2.07 KB | 76d5769a56c17e2a5f7c128abba0ad8d |
| statistics/ |