| Id: | DNase-seq/ENCSR060TTR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR060TTR [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours output_type: peaks audit_error: Alignment file {ENCFF347RFH|/files/ENCFF347RFH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 17786778 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR060TTR | float |
DNase-seq_ENCSR060TTR |
DNase-seq ENCSR060TTR [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours"]
|
 |
[0.508, 53.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF748XNP.bed.gz | 354.77 KB | c1557cf428a6a807354d7db5032ac4f7 |
| ENCFF748XNP.bed.gz.dvc | 100.0 B | 53b0c592ae70a1a34f2bde6f52f675a1 |
| ENCFF748XNP.tabix.bed.gz | 317.82 KB | aaa56e3a4af007b28ad21f2cc11a8962 |
| ENCFF748XNP.tabix.bed.gz.dvc | 106.0 B | 772ed3d12c4d4f1c1056a2c95a4b280b |
| ENCFF748XNP.tabix.bed.gz.tbi | 183.83 KB | 7ca930e4cfc1c48e8a143bcfbf8c2726 |
| ENCFF748XNP.tabix.bed.gz.tbi.dvc | 110.0 B | 1b96d5a466e162c32f378b355147a697 |
| genomic_resource.yaml | 2.47 KB | d43dc7c0f1ec84e1544cbb16e3d0907c |
| genomic_resource_original.yaml | 2.23 KB | 6b104433514035c014b1149b28248126 |
| statistics/ |