DNase-seq_ENCSR060MJY
DNase-seq ENCSR060MJY [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR060MJY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR060MJY [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF978AHA|/files/ENCFF978AHA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR060MJY | float |
DNase-seq_ENCSR060MJY |
DNase-seq ENCSR060MJY [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0632, 20.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF427NRJ.bed.gz | 966.44 KB | 9beddbd74be4fc83fe25744349374867 |
| ENCFF427NRJ.bed.gz.dvc | 100.0 B | 832075665ae4324f80186f4317e008da |
| ENCFF427NRJ.tabix.bed.gz | 890.12 KB | f6daf988ab0c82ae413809d4525a80eb |
| ENCFF427NRJ.tabix.bed.gz.dvc | 106.0 B | ff461c637ce5cb3a79c6ac6f9525b3ab |
| ENCFF427NRJ.tabix.bed.gz.tbi | 258.64 KB | 9d7ab5adcdbbc59bfff2d1ce8877cc06 |
| ENCFF427NRJ.tabix.bed.gz.tbi.dvc | 110.0 B | 21e3de5ac81dfd97cdde8fb4dbfb91b9 |
| genomic_resource.yaml | 2.31 KB | 12dfb7743a8fc8b966cbd7b6e32f7495 |
| genomic_resource_original.yaml | 2.15 KB | c27669ae6acaa7eff81ecc04ed12ba59 |
| statistics/ |