DNase-seq_ENCSR060HPL
DNase-seq ENCSR060HPL [biosample_summary="Homo sapiens coronary artery tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR060HPL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR060HPL [biosample_summary="Homo sapiens coronary artery tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN776MIQ|/analyses/ENCAN776MIQ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF564ZSB|/files/ENCFF564ZSB/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR060HPL | float |
DNase-seq_ENCSR060HPL |
DNase-seq ENCSR060HPL [biosample_summary="Homo sapiens coronary artery tissue female adult (53 years)"]
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[1, 4.33e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF822UQG.bed.gz | 1.94 MB | 334a19a1f14ead51fc26f618d0b5dbdc |
| ENCFF822UQG.bed.gz.dvc | 101.0 B | 7a481dfec10fe4dc075560630cfae5fe |
| ENCFF822UQG.tabix.bed.gz | 1.66 MB | da7a6b8e93831f5c45e95495f619955b |
| ENCFF822UQG.tabix.bed.gz.dvc | 107.0 B | 4e17897e2e4ad58dcc19f34fd3c8f5fe |
| ENCFF822UQG.tabix.bed.gz.tbi | 380.33 KB | 5398fb3a541e784a81dd058dcc0d2962 |
| ENCFF822UQG.tabix.bed.gz.tbi.dvc | 110.0 B | 2746d092e1605d5e447769765cbf0d54 |
| genomic_resource.yaml | 2.21 KB | a663f3898dc5efb9a5362a384b0e02c6 |
| genomic_resource_original.yaml | 2.11 KB | 03bdc654cfb727e5cbe13e08e3fa2e25 |
| statistics/ |