DNase-seq_ENCSR059NIN
DNase-seq ENCSR059NIN [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR059NIN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR059NIN [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF397NNU|/files/ENCFF397NNU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR059NIN | float |
DNase-seq_ENCSR059NIN |
DNase-seq ENCSR059NIN [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years)"]
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[0.0631, 15.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF562TNJ.bed.gz | 801.05 KB | fd30c644f1bc1665b6b9408338386271 |
| ENCFF562TNJ.bed.gz.dvc | 100.0 B | c541b62d23d94ae1d8418de2d405c4a9 |
| ENCFF562TNJ.tabix.bed.gz | 732.92 KB | 8b8c89a5ba279da0b597a285370fd838 |
| ENCFF562TNJ.tabix.bed.gz.dvc | 106.0 B | 1eef2b933c9625778697b4bb4f34df86 |
| ENCFF562TNJ.tabix.bed.gz.tbi | 280.95 KB | ce85071ec0bf5afc5bd70bf619dfe601 |
| ENCFF562TNJ.tabix.bed.gz.tbi.dvc | 110.0 B | 04e8c54d91033ed8568123690b3299ce |
| genomic_resource.yaml | 2.29 KB | e851d9e7911e9ec927e06fe035c0b24c |
| genomic_resource_original.yaml | 2.13 KB | 698c4e89fe2c2673f45070abc2acd6e2 |
| statistics/ |