DNase-seq_ENCSR059LXL
DNase-seq ENCSR059LXL [biosample_summary="Homo sapiens muscle of leg tissue male embryo (96 days)"]
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| Id: | DNase-seq/ENCSR059LXL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR059LXL [biosample_summary="Homo sapiens muscle of leg tissue male embryo (96 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (96 days) output_type: peaks audit_warning: Alignment file {ENCFF503BFE|/files/ENCFF503BFE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 37121775 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF503BFE|/files/ENCFF503BFE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR059LXL | float |
DNase-seq_ENCSR059LXL |
DNase-seq ENCSR059LXL [biosample_summary="Homo sapiens muscle of leg tissue male embryo (96 days)"]
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[0.216, 10.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF141TDT.bed.gz | 440.76 KB | 837ca1c8b3b4a784fa3461792155c9a9 |
| ENCFF141TDT.bed.gz.dvc | 100.0 B | d4b16a81c07d0e24919b9a7e510d9eaf |
| ENCFF141TDT.tabix.bed.gz | 404.15 KB | 4f7e60fd7f1eceaf3cbfb04eaf9aef15 |
| ENCFF141TDT.tabix.bed.gz.dvc | 106.0 B | 8f5ed3a422eb52780d4d592a068161be |
| ENCFF141TDT.tabix.bed.gz.tbi | 226.62 KB | 18909f79e658909df2272476b5caaacd |
| ENCFF141TDT.tabix.bed.gz.tbi.dvc | 110.0 B | 2d19323dd10d3da78d496078739f08cc |
| genomic_resource.yaml | 2.66 KB | 6b54f90aea7378cbc85c85780d8cddd9 |
| genomic_resource_original.yaml | 2.56 KB | f2991794453c9d907fb399ab003440d7 |
| statistics/ |